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1

Human papillomavirus oncogenes reprogram the cervical cancer microenvironment independently of and synergistically with estrogen

Spurgeon, Megan E., den Boon, Johan A., Horswill, Mark, Barthakur, Sonalee, Forouzan, Omid, Rader, Janet S., Beebe, David J., Roopra, Avtar, Ahlquist, Paul, Lambert, Paul F.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.70 MB

english, 2017

2

Anticonvulsant and antiepileptic actions of 2-deoxy-D-glucose in epilepsy models

Carl E. Stafstrom, Jeffrey C. Ockuly, Lauren Murphree, Matthew T. Valley, Avtar Roopra, Thomas P. Sutula

Journal:

Annals of Neurology

Year:

2009

Language:

english

File:

PDF, 450 KB

english, 2009

3

In vivo detection of Egr2 binding to target genes during peripheral nerve myelination

Sung-Wook Jang, Scott E. LeBlanc, Avtar Roopra, Lawrence Wrabetz, John Svaren

Journal:

Journal of Neurochemistry

Year:

2006

Language:

english

File:

PDF, 774 KB

english, 2006

4

Seizure suppression via glycolysis inhibition with 2-deoxy-D-glucose (2DG)

Carl E. Stafstrom, Avtar Roopra, Thomas P. Sutula

Journal:

Year:

2008

Language:

english

File:

PDF, 90 KB

english, 2008

5

Interaction of the Repressor Element 1-silencing Transcription Factor (REST) with Target Genes

Ian C. Wood, Nikolai D. Belyaev, Alexander W. Bruce, Caroline Jones, Mohini Mistry, Avtar Roopra, Noel J. Buckley

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.31 MB

english, 2003

6

Localized Domains of G9a-Mediated Histone Methylation Are Required for Silencing of Neuronal Genes

Avtar Roopra, Romena Qazi, Barry Schoenike, Timothy J Daley, John F Morrison

Journal:

Year:

2004

Language:

english

File:

PDF, 511 KB

english, 2004

7

Repression and activation of muscarinic receptor genes

N.J. Buckley, U. Bachfischer, M. Canut, M. Mistry, S. Pepitoni, A. Roopra, L. Sharling, I.C. Wood

Journal:

Year:

1999

Language:

english

File:

PDF, 408 KB

english, 1999

8

Epigenetics and epilepsy

Roopra, Avtar, Dingledine, Raymond, Hsieh, Jenny

Journal:

Year:

2012

Language:

english

File:

PDF, 237 KB

english, 2012

9

jSimMacs for GROMACS: A Java Application for Advanced Molecular Dynamics Simulations with Remote Access Capability

Roopra, Sanjit, Knapp, Bernhard, Omasits, Ulrich, Schreiner, Wolfgang

Journal:

Journal of Chemical Information and Modeling

Year:

2009

Language:

english

File:

PDF, 224 KB

english, 2009

10

A REST derived gene signature stratifies glioblastomas into chemotherapy resistant and responsive disease

Wagoner, Matthew P, Roopra, Avtar

Journal:

Year:

2012

Language:

english

File:

PDF, 1.18 MB

english, 2012

11

Transcriptional Repression by Neuron-Restrictive Silencer Factor Is Mediated via the Sin3-Histone Deacetylase Complex

Roopra, A., Sharling, L., Wood, I. C., Briggs, T., Bachfischer, U., Paquette, A. J., Buckley, N. J.

Journal:

Molecular and Cellular Biology

Year:

2000

Language:

english

File:

PDF, 1.65 MB

english, 2000

12

The Basic Helix-Loop-Helix Protein, SHARP-1, Represses Transcription by a Histone Deacetylase-dependent and Histone Deacetylase-independent Mechanism

Garriga-Canut, M., Roopra, A., Buckley, N. J.

Journal:

Journal of Biological Chemistry

Year:

2001

Language:

english

File:

PDF, 804 KB

english, 2001

13

Neural Specific Expression of the m4 Muscarinic Acetylcholine Receptor Gene Is Mediated by a RE1/NRSE-type Silencing Element

Journal:

Journal of Biological Chemistry

Year:

1996

Language:

english

File:

PDF, 1.24 MB

english, 1996

14

Induction of the RNA Regulator LIN28A Is Required for the Growth and Pathogenesis of RESTless Breast Tumors

Gunsalus, K. T. W., Wagoner, M. P., Meyer, K., Potter, W. B., Schoenike, B., Kim, S., Alexander, C. M., Friedl, A., Roopra, A.

Journal:

Cancer Research

Year:

2012

Language:

english

File:

PDF, 2.02 MB

english, 2012

15

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

Ostlund, G., Schmitt, T., Forslund, K., Kostler, T., Messina, D. N., Roopra, S., Frings, O., Sonnhammer, E. L. L.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 5.21 MB

english, 2010

16

jSquid: a Java applet for graphical on-line network exploration

Klammer, M., Roopra, S., Sonnhammer, E. L. L.

Journal:

Year:

2008

Language:

english

File:

PDF, 187 KB

english, 2008

17

Up-regulation of the mitotic checkpoint component Mad1 causes chromosomal instability and resistance to microtubule poisons

Ryan, S. D., Britigan, E. M. C., Zasadil, L. M., Witte, K., Audhya, A., Roopra, A., Weaver, B. A.

Journal:

Proceedings of the National Academy of Sciences

Year:

2012

Language:

english

File:

PDF, 1.59 MB

english, 2012

18

Structure of the m4 Cholinergic Muscarinic Receptor Gene and Its Promoter

Journal:

Journal of Biological Chemistry

Year:

1995

Language:

english

File:

PDF, 288 KB

english, 1995

19

Two Isoforms of the RNA Binding Protein, Coding Region Determinant-binding Protein (CRD-BP/IGF2BP1), Are Expressed in Breast Epithelium and Support Clonogenic Growth of Breast Tumor Cells

Fakhraldeen, Saja A., Clark, Rod J., Roopra, Avtar, Chin, Emily N., Huang, Wei, Castorino, John, Wisinski, Kari B., Kim, TaeWon, Spiegelman, Vladimir S., Alexander, Caroline M.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 4.19 MB

english, 2015

20

Syndecan-1 Is Required to Maintain Intradermal Fat and Prevent Cold Stress

Kasza, Ildiko, Suh, Yewseok, Wollny, Damian, Clark, Rod J., Roopra, Avtar, Colman, Ricki J., MacDougald, Ormond A., Shedd, Timothy A., Nelson, David W., Yen, Mei-I, Yen, Chi-Liang Eric, Alexander, Car

Journal:

Year:

2014

Language:

english

File:

PDF, 2.77 MB

english, 2014

21

Direct single stranded sequencing from agarose of polymerase chain reaction products

Green, A., Roopra, A., Vaudin, M.

Journal:

Nucleic Acids Research

Year:

1990

Language:

english

File:

PDF, 2.03 MB

english, 1990

22

Reduced Juvenile Long-Term Depression in Tuberous Sclerosis Complex Is Mitigated in Adults by Compensatory Recruitment of mGluR5 and Erk Signaling

Potter, Wyatt B., Basu, Trina, O'Riordan, Kenneth J., Kirchner, Allison, Rutecki, Paul, Burger, Corinna, Roopra, Avtar, Abraham, Cliff

Journal:

Year:

2013

Language:

english

File:

PDF, 2.31 MB

english, 2013

23

Type 1 Insulin-Like Growth Factor Receptor/Insulin Receptor Substrate 1 Signaling Confers Pathogenic Activity on Breast Tumor Cells Lacking REST

Meyer, Kassondra, Albaugh, Brittany, Schoenike, Barry, Roopra, Avtar

Journal:

Molecular and Cellular Biology

Year:

2015

Language:

english

File:

PDF, 3.21 MB

english, 2015

24

The role of REST/NRSF in regulating endogenous gene expression

Wood, I.C., Mistry, M., Roopra, A., Buckley, N.J.

Journal:

Biochemical Society Transactions

Year:

1999

Language:

english

File:

PDF, 122 KB

english, 1999

25

The neuron restrictive silencer factor remodels chromatin and represses transcription in neurones

Wood, I.C., Roopra, A., Mistry, M., Buckley, N.J.

Journal:

Biochemical Society Transactions

Year:

2000

Language:

english

File:

PDF, 137 KB

english, 2000

26

Transcriptional Repression by the Neuron-Restrictive Silencer Factor (REST/NRSF) is Mediated via the Sin3/Histone Deacetylase complex

Roopra, Avtar, Sharling, Lisa, Wood, Ian C., Briggs, Teresa, Bachfischer, Ulla, Paquette, Alice J., Buckley, Noel J.

Journal:

Biochemical Society Transactions

Year:

2000

Language:

english

File:

PDF, 137 KB

english, 2000

27

MicroRNA miR-29c Down-Regulation Leading to De-Repression of Its Target DNA Methyltransferase 3a Promotes Ischemic Brain Damage

Pandi, Gopal, Nakka, Venkata P., Dharap, Ashutosh, Roopra, Avtar, Vemuganti, Raghu, Arumugam, Thiruma V.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.31 MB

english, 2013

28

Tumor Suppressive Function of mir-205 in Breast Cancer Is Linked to HMGB3 Regulation

Elgamal, Ola A., Park, Jong-Kook, Gusev, Yuriy, Azevedo-Pouly, Ana Clara P., Jiang, Jinmai, Roopra, Avtar, Schmittgen, Thomas D., Guan, Xin-Yuan

Journal:

Year:

2013

Language:

english

File:

PDF, 2.80 MB

english, 2013

29

Altered circadian rhythms and oscillation of clock genes and sirtuin 1 in a model of sudden unexpected death in epilepsy

Wallace, Eli, Wright, Samantha, Schoenike, Barry, Roopra, Avtar, Rho, Jong M., Maganti, Rama K.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.80 MB

english, 2018

30

PGC‐1a integrates a metabolism and growth network linked to caloric restriction

Miller, Karl N., Clark, Josef P., Martin, Stephen A., Howell, Porsha R., Burhans, Maggie S., Haws, Spencer A., Johnson, Nathan B., Rhoads, Timothy W, Pavelec, Derek M., Eliceiri, Kevin W., Roopra, Avt

Journal:

Year:

2019

Language:

english

File:

PDF, 1.80 MB

english, 2019

31

Deep Learning in Gastrointestinal Endoscopy

Patel, Vivek, Armstrong, David, Ganguli, Malika, Roopra, Sandeep, Kantipudi, Neha, Albashir, Siwar, Kamath, Markad V.

Journal:

Critical Reviews in Biomedical Engineering

Year:

2016

Language:

english

File:

PDF, 2.61 MB

english, 2016

32

A systems approach identifies Enhancer of Zeste Homolog 2 (EZH2) as a protective factor in epilepsy

Khan, Nadia, Schoenike, Barry, Basu, Trina, Grabenstatter, Heidi, Rodriguez, Genesis, Sindic, Caleb, Johnson, Margaret, Wallace, Eli, Maganti, Rama, Dingledine, Raymond, Roopra, Avtar, Barsh, Gregory

Journal:

Year:

2019

Language:

english

File:

PDF, 4.10 MB

english, 2019

33

A systems approach identifies Enhancer of Zeste Homolog 2 (EZH2) as a protective factor in epilepsy

Khan, Nadia, Schoenike, Barry, Basu, Trina, Grabenstatter, Heidi, Rodriguez, Genesis, Sindic, Caleb, Johnson, Margaret, Wallace, Eli, Maganti, Rama, Dingledine, Raymond, Roopra, Avtar, Barsh, Gregory

Journal:

Year:

2019

File:

PDF, 4.10 MB

2019

34

MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data

Roopra, Avtar, Ioshikhes, Ilya

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 4.57 MB

2020

35

CTCF loss mediates unique DNA hypermethylation landscapes in human cancers

Damaschke, Nathan A., Gawdzik, Joseph, Avilla, Mele, Yang, Bing, Svaren, John, Roopra, Avtar, Luo, Jian-Hua, Yu, Yan P., Keles, Sunduz, Jarrard, David F.

Journal:

Clinical Epigenetics

Year:

2020

File:

PDF, 3.09 MB

2020

36

Sex- and region-specific differences in the transcriptomes of rat microglia from the brainstem and cervical spinal cord

Ewald, Andrea C, Kiernan, Elizabeth A, Roopra, Avtar S, Radcliff, Abigail B, Timko, Rebecca R, Baker, Tracy L, Watters, Jyoti J

Journal:

Journal of Pharmacology and Experimental Therapeutics

Year:

2020

File:

PDF, 3.60 MB

2020

37

p53 is not required for cell death and tumor suppression caused by high chromosomal instability

Funk, Laura C, Wan, Jun, Ryan, Sean D., Kaur, Charanjeet, Sullivan, Ruth, Roopra, Avtar, Weaver, Beth A.

Journal:

Molecular Cancer Research

Year:

2020

File:

PDF, 605 KB

2020

38

Prior Hypoxia Exposure Enhances Murine Microglial Inflammatory Gene Expression in vitro Without Concomitant H3K4me3 Enrichment

Kiernan, Elizabeth A., Ewald, Andrea C., Ouellette, Jonathan N., Wang, Tao, Agbeh, Abiye, Knutson, Andrew O., Roopra, Avtar S., Watters, Jyoti J.

Journal:

Frontiers in Cellular Neuroscience

Year:

2020

File:

PDF, 3.22 MB

2020

39

Ensuring patient safety during the development of ambulatory emergency care

Roopra, Jaspal S, Bartlett, James D, Mistry, Paresh D, Pasha, Kamran

Journal:

British Journal of Healthcare Management

Year:

2014

File:

PDF, 188 KB

2014